LIGPLOT

LIGPLOT is a computer program used in bioinformatics to generate schematic diagrams of protein-ligand interactions. It was developed by Andrew Wallace and Janette Thornley at the Cancer Research UK London Research Institute.

Overview

LIGPLOT is a software tool designed to automatically generate schematic 2D representations of protein-ligand complexes from 3D coordinates, typically derived from X-ray crystallography or NMR spectroscopy. The program is widely used in the field of bioinformatics and structural biology to visualize and analyze the interactions between proteins and ligands.

Functionality

The main function of LIGPLOT is to produce a 2D diagram that shows the interactions between a protein and its ligand. The program identifies hydrogen bonds, hydrophobic interactions, and other key features of the protein-ligand complex. It then generates a simplified 2D diagram that highlights these interactions, making it easier for researchers to understand the complex 3D structure of the protein-ligand complex.

Usage

LIGPLOT is typically used by researchers in the field of bioinformatics and structural biology. It is particularly useful for visualizing the interactions between proteins and small molecules, which can aid in the design of new drugs and the understanding of biological processes.

See also

• Protein-ligand docking
• Molecular graphics
• Molecular modelling

External links

• Official LIGPLOT website

LIGPLOT Resources
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