SAMHD1

SAMHD1
Crystal structure of SAMHD1
Identifiers
Symbol	?
NCBI gene	25939
HGNC	18220
OMIM	606754
RefSeq	NM_015474
UniProt	Q9Y3Z3
Search for Structures Swiss-model Domains InterPro

SAMHD1 (SAM domain and HD domain-containing protein 1) is a human protein encoded by the SAMHD1 gene. It is a deoxynucleotide triphosphohydrolase (dNTPase) that plays a crucial role in the regulation of intracellular deoxynucleotide triphosphate (dNTP) levels and has been implicated in the restriction of HIV-1 replication in certain immune cells.

Structure

SAMHD1 is composed of 626 amino acids and contains two main domains: the sterile alpha motif (SAM) domain and the histidine-aspartate (HD) domain. The SAM domain is involved in protein-protein interactions, while the HD domain is responsible for the enzymatic activity of the protein, specifically the hydrolysis of dNTPs into deoxynucleosides and inorganic triphosphate.

Function

SAMHD1 is primarily expressed in myeloid cells, such as dendritic cells and macrophages, as well as in resting CD4+ T cells. Its main function is to regulate the intracellular pool of dNTPs, which are the building blocks for DNA synthesis. By hydrolyzing dNTPs, SAMHD1 reduces their availability, thereby inhibiting the replication of retroviruses like HIV-1 that rely on these nucleotides for reverse transcription.

Role in HIV-1 Restriction

SAMHD1 restricts HIV-1 replication by depleting the dNTP pool, which is essential for the reverse transcription of the viral RNA genome into DNA. This restriction is particularly effective in non-dividing cells, where dNTP levels are naturally low. The viral protein Vpx, found in some lentiviruses like HIV-2 and SIV, can counteract SAMHD1 by targeting it for proteasomal degradation, thereby allowing viral replication to proceed.

Clinical Significance

Mutations in the SAMHD1 gene have been associated with Aicardi-Goutières syndrome (AGS), a rare genetic disorder characterized by encephalopathy and an inappropriate immune response. SAMHD1 mutations can lead to an accumulation of intracellular dNTPs, resulting in increased DNA damage and an inflammatory response.

Research and Therapeutic Implications

Understanding the mechanism of SAMHD1-mediated HIV-1 restriction has potential therapeutic implications. Modulating SAMHD1 activity could enhance the innate immune response against HIV-1 or other viral infections. Additionally, SAMHD1's role in regulating dNTP levels makes it a potential target for cancer therapy, as many cancer cells have altered dNTP metabolism.

Also see

• HIV-1
• Aicardi-Goutières syndrome
• Deoxynucleotide triphosphate
• Vpx