Enterovirus 5′ cloverleaf cis-acting replication element

RF00386

Enterovirus 5′ Cloverleaf Cis-acting Replication Element is a crucial RNA structure found in the genome of enteroviruses, a group of viruses that includes poliovirus, coxsackievirus, and echovirus, among others. This element plays a significant role in the replication process of the virus, influencing both the synthesis of viral RNA and the translation of viral proteins. Understanding the structure and function of the enterovirus 5′ cloverleaf cis-acting replication element is essential for developing antiviral strategies against enterovirus infections.

Structure

The 5′ cloverleaf structure is located at the very beginning of the enterovirus RNA genome. It is named for its distinctive four-leafed clover shape, which is formed by four stem-loop structures. This configuration is critical for the element's function in replication. The structure serves as a recognition site for viral and host proteins that are necessary for the initiation of RNA synthesis.

Function

The primary function of the enterovirus 5′ cloverleaf cis-acting replication element is to mediate the replication of the viral RNA genome. It does this by acting as a scaffold for the assembly of the replication complex, which includes both viral and host proteins. Among these proteins, the viral polymerase (3D^pol) and the viral protein 3CD are particularly important, as they directly participate in RNA synthesis.

The 5′ cloverleaf also plays a role in the switch from translation to replication of the viral genome. Early in the infection cycle, the viral RNA is translated to produce viral proteins. Subsequently, the replication complex assembles at the 5′ cloverleaf, marking the transition to the replication phase, where new viral RNA genomes are synthesized.

Implications for Antiviral Research

The enterovirus 5′ cloverleaf cis-acting replication element is a target for antiviral research. Inhibitors that can disrupt the interaction between the cloverleaf structure and the viral or host proteins required for replication could potentially serve as antiviral agents. Understanding the detailed mechanisms of how the cloverleaf functions in replication can aid in the design of such inhibitors.

See Also

• Viral replication
• RNA virus
• Poliovirus
• Coxsackievirus
• Echovirus