Fixation index

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Colorful FST average nonfull

Full Fst Average

Fixation index (FST) is a measure used in population genetics to quantify the level of genetic variation among subpopulations relative to the total genetic variation of the entire population. It is an important concept in the study of evolutionary biology, genetic diversity, and population structure. The fixation index is crucial for understanding how populations diverge genetically over time, which can have implications for conservation genetics, evolutionary ecology, and the study of human evolution.

Definition

The fixation index, FST, is calculated based on genetic polymorphism data, such as allele frequencies, from different populations. It ranges from 0 to 1, where 0 indicates no genetic differentiation (complete sharing of genetic variants) between populations, and 1 indicates complete genetic differentiation (no shared genetic variants). An FST value closer to 0 suggests that most of the genetic variation is found within populations, while a value closer to 1 suggests that a significant amount of genetic variation exists between populations.

Calculation

The calculation of FST is based on the comparison of the genetic variance within populations (HS) to the total genetic variance (HT). The formula for FST is:

\[ F_{ST} = \frac{(H_T - H_S)}{H_T} \]

where:

• \(H_T\) is the total genetic variance observed in the combined population,
• \(H_S\) is the average genetic variance observed within each subpopulation.

Applications

FST is widely used in various fields of biology and anthropology. In conservation biology, it helps in identifying genetically distinct populations that may need separate conservation strategies. In human genetics, FST values among different human populations can provide insights into historical migration patterns, population structure, and the effects of natural selection. In agricultural science, understanding the genetic diversity within and between populations of crop species can guide breeding programs and the conservation of genetic resources.

Limitations

While FST is a valuable tool in population genetics, it has limitations. It assumes a simple model of population structure and may not accurately reflect the complexity of real-world populations. Additionally, FST values can be influenced by the choice of genetic markers and the number of populations analyzed. Therefore, FST should be interpreted within the context of comprehensive genetic and ecological information.

See Also

• Population Genetics
• Genetic Diversity
• Evolutionary Biology
• Conservation Genetics