Messenger RNA

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Messenger RNA (mRNA) is a pivotal type of RNA molecule that plays an instrumental role in the cellular process of protein synthesis. It serves as the intermediary between DNA, the genetic material, and the ribosome, the cellular machinery that assembles proteins. This article delves into the structure, synthesis, processing, function, and intricacies of mRNA in both prokaryotic and eukaryotic organisms.

Overview

The primary function of mRNA is to act as a blueprint, directing the synthesis of proteins based on the genetic information inherited from DNA. This action forms a critical component of the central dogma of molecular biology, which elucidates the flow of genetic information within a biological system. In this paradigm, DNA undergoes transcription to yield mRNA, which then serves as a template for translation, ultimately producing proteins.

The code within mRNA is structured as sequences of nucleotides, much like DNA. These sequences, organized in triplets known as codons, determine the order of amino acids in the resultant protein. Every codon corresponds to a specific amino acid, except for the stop codons, which signal the end of the protein synthesis process. The intricate mechanism of interpreting codons and incorporating the appropriate amino acids into the growing protein chain involves two other crucial RNA molecules: Transfer RNA (tRNA) and ribosomal RNA (rRNA). While tRNA recognizes and brings the corresponding amino acid for each codon, rRNA forms the core of the ribosome, where the actual process of protein synthesis occurs.

Synthesis and Processing

The lifecycle of an mRNA molecule is brief. It is transcribed, potentially edited and processed, and finally degraded. Throughout its existence, the molecule may undergo various modifications, particularly in eukaryotic cells.

Transcription

Main article: Transcription (genetics)

Transcription is the initial step wherein a segment of DNA is copied into mRNA. This copying, mediated by the enzyme RNA polymerase, can occur in both eukaryotic and prokaryotic cells. However, a distinction in eukaryotic transcription is the association of RNA polymerase with mRNA-processing enzymes, ensuring swift processing post-transcription. The immediate product of transcription is known as precursor mRNA (pre-mRNA), which undergoes further processing to yield mature mRNA.

Eukaryotic pre-mRNA Processing

Main article: Post-transcriptional modification

Eukaryotic cells exhibit intricate mRNA processing that distinguishes them from their prokaryotic counterparts. While mRNA from bacteria and archaea is typically ready for translation soon after its synthesis, eukaryotic pre-mRNA demands extensive modification.

5' cap addition

Main article: 5' cap

Upon transcription initiation, the 5' end of the newly formed mRNA is adorned with a 5' cap, a modified guanine nucleotide. This cap plays an essential role in mRNA stability, ribosome recognition, and protection against exonucleases. The process of capping is closely tied to transcription and relies on an enzymatic complex linked to the RNA polymerase.

Splicing

Main article: Splicing (genetics)

Pre-mRNA in eukaryotes contains regions that do not code for proteins called introns. Splicing is the removal of these introns, leaving only the coding sequences, termed exons. This process can vary, allowing a single gene to produce multiple protein variants, referred to as alternative splicing. The spliceosome, an RNA-protein complex, typically conducts splicing.

Editing

Certain mRNA molecules may undergo editing, a process that alters their nucleotide sequence. For instance, the mRNA for apolipoprotein B in humans is edited differently in various tissues, leading to distinct protein products.

Polyadenylation

Main article: Polyadenylation

Polyadenylation is the attachment of a poly(A) tail to the 3' end of an mRNA molecule. This tail, comprising several adenine nucleotides, ensures mRNA stability and has roles in transcription termination, nuclear export, and translation.

Transport

A hallmark difference between eukaryotic and prokaryotic cells is the separation of transcription and translation compartments. Eukaryotic mRNA must traverse from the nucleus, where it's synthesized, to the cytoplasm for translation. This transport is regulated and involves the nuclear pore complex. In specialized cells like neurons, mRNA transport is even more complex, necessitating the mRNA to move from the cell body to distant locations for localized protein synthesis.

Translation

Main article: Translation (genetics)

Upon reaching the cytoplasm, mature mRNA serves as a template for translation, guiding the ribosomes in protein synthesis. In prokaryotes, transcription and translation can occur almost simultaneously since they share the same cellular compartment. In contrast, eukaryotic cells, with their separate compartments, have decoupled transcription and translation processes.

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